Package: bio-tradis (1.4.1+dfsg-1)

[ Source: bio-tradis  ]

analyse the output from TraDIS analyses of genomic sequences

Bio-Tradis contains a set of tools to analyse the output from TraDIS analyses.

The Bio-Tradis analysis pipeline is implemented as an extensible Perl library which can either be used as is, or as a basis for the development of more advanced analysis tools.

Please note: You need to manually install BioConductor Edger which can not be distributed by Debian in recent version since it is using non-distributable code locfit.

Other Packages Related to bio-tradis

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• dep: r-base-core

  GNU R core of statistical computation and graphics system

• dep: r-cran-getopt

  GNU R package providing command-line parsing functionality

• dep: r-cran-mass

  GNU R package of Venables and Ripley's MASS

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• dep: smalt

  Sequence Mapping and Alignment Tool

• dep: tabix

  generic indexer for TAB-delimited genome position files

• sug: artemis

  genome browser and annotation tool

• sug: r-bioc-edger

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