Package: gmap (2021-02-22+ds-1)

Links for gmap

Debian Resources:

Download Source Package gmap:

Maintainers:

Debian Med Packaging Team (QA Page, Mail Archive)
Shaun Jackman (QA Page)
Andreas Tille (QA Page)
Alexandre Mestiashvili (QA Page)
Nilesh Patra (QA Page)

External Resources:

Homepage [research-pub.gene.com]

Similar packages:

spliced and SNP-tolerant alignment for mRNA and short reads

This package contains the programs GMAP and GSNAP as well as utilities to manage genome databases in GMAP/GSNAP format. GMAP (Genomic Mapping and Alignment Program) is a tool for aligning EST, mRNA and cDNA sequences. GSNAP (Genomic Short-read Nucleotide Alignment Program) is a tool for aligning single-end and paired-end transcriptome reads. Both tools can use a database of

 * known splice sites and identify novel splice sites.
 * known single-nucleotide polymorphisms (SNPs).

GSNAP can align bisulfite-treated DNA.

Tags: Field: Biology, field::biology:bioinformatics, field::biology:structural, Role: Program, Purpose: Analysing

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dep: libc6 (>= 2.29)

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dep: perl

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dep: zlib1g (>= 1:1.2.6)

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Architecture	Package Size	Installed Size	Files
amd64	11,332.0 kB	86,543.0 kB	[list of files]
arm64	6,976.6 kB	57,915.0 kB	[list of files]
armel	5,605.3 kB	43,621.0 kB	[list of files]
armhf	5,756.4 kB	41,853.0 kB	[list of files]
i386	5,907.0 kB	43,773.0 kB	[list of files]
mips64el	5,324.5 kB	54,666.0 kB	[list of files]
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ppc64el	7,219.0 kB	60,727.0 kB	[list of files]