Package: libjellyfish-2.0-2 (2.3.0-15 and others)

[ Source: jellyfish  ]

count k-mers in DNA sequences (dynamic library of jellyfish)

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

This package contains the dynamic library the main executable of jellyfish is linked to.

Tags: Role: Shared Library

Other Packages Related to libjellyfish-2.0-2

• dep: libc6 (>= 2.34)

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6-udeb

• dep: libgcc-s1 (>= 3.0) [not armel, armhf]

  GCC támogató programkönyvtár

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libstdc++6 (>= 11)

  GNU Standard C++ Library v3

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Architecture	Version	Package Size	Installed Size	Files
amd64	2.3.0-15+b3	61.7 kB	192.0 kB	[list of files]
arm64	2.3.0-15+b3	57.4 kB	219.0 kB	[list of files]
armel	2.3.0-15+b3	53.1 kB	163.0 kB	[list of files]
armhf	2.3.0-15+b3	54.0 kB	135.0 kB	[list of files]
i386	2.3.0-15+b3	68.8 kB	195.0 kB	[list of files]
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ppc64el	2.3.0-15+b3	67.4 kB	284.0 kB	[list of files]