Paquet : pirs (2.0.2+dfsg-12)

[ Paquet source : pirs  ]

Profile based Illumina pair-end Reads Simulator

The program pIRS can be used for simulating Illumina PE reads, with a series of characters generated by Illumina sequencing platform, such as insert size distribution, sequencing error(substitution, insertion, deletion), quality score and GC content-coverage bias.

The insert size follows a normal distribution, so users should set the mean value and standard deviation. Usually the standard deviation is set as 1/20 of the mean value. The normal distribution by Box-Muller method is simulated.

The program simulates sequencing error, quality score and GC content- coverage bias according to the empirical distribution profile. Some default profiles counted from lots of real sequencing data are provided.

To simulate reads from diploid genome, users should simulate the diploid genome sequence firstly by setting the ratio of heterozygosis SNP, heterozygosis InDel and structure variation.

Autres paquets associés à pirs

• dep: fonts-liberation

  fonts with the same metrics as Times, Arial and Courier

• dep: gnuplot-qt

  programme de tracé interactif en ligne de commande – paquet pour Qt

  ou gnuplot

  programme de tracé interactif en ligne de commande
  un paquet virtuel est également fourni par gnuplot-nox, gnuplot-qt, gnuplot-x11

• dep: libc6 (>= 2.34)

  bibliothèque C GNU : bibliothèques partagées
  un paquet virtuel est également fourni par libc6-udeb

• dep: libgcc-s1 (>= 4.2)

  bibliothèque de prise en charge de GCC

• dep: libgomp1 (>= 4.9)

  bibliothèque GCC pour OpenMP (GOMP)

• dep: libgzstream0 (>= 1.5+dfsg)

  provide functionality of zlib C-library in a C++ iostream

• dep: libstdc++6 (>= 13.1)

  bibliothèque standard C++ de GNU v3

• dep: pirs-profiles

  profile basd Illumina pair-end Reads Simulator (profile data)

• dep: zlib1g (>= 1:1.2.0.2)

  Bibliothèque de compression - binaires

Télécharger pirs

Télécharger pour toutes les architectures proposées

Architecture	Taille du paquet	Espace occupé une fois installé	Fichiers
i386	122,5 ko	392,0 ko	[liste des fichiers]