Paquet : crac (2.5.2+dfsg-6 et autres)

[ Paquet source : crac  ]

integrated RNA-Seq read analysis

CRAC is a tool to analyze High Throughput Sequencing (HTS) data in comparison to a reference genome. It is intended for transcriptomic and genomic sequencing reads. More precisely, with transcriptomic reads as input, it predicts point mutations, indels, splice junction, and chimeric RNAs (ie, non colinear splice junctions). CRAC can also output positions and nature of sequence error that it detects in the reads. CRAC uses a genome index. This index must be computed before running the read analysis. For this sake, use the command "crac-index" on your genome files. You can then process the reads using the command crac. See the man page of CRAC (help file) by typing "man crac". CRAC requires large amount of main memory on your computer. For processing against the Human genome, say 50 million reads of 100 nucleotide each, CRAC requires about 40 gigabytes of main memory. Check whether the system of your computing server is equipped with sufficient amount of memory before launching an analysis.

Autres paquets associés à crac

• dep: libc6 (>= 2.34) [non arm64]

  bibliothèque C GNU : bibliothèques partagées
  un paquet virtuel est également fourni par libc6-udeb

  dep: libc6 (>= 2.38) [arm64]

• dep: libgcc-s1 (>= 3.0) [non riscv64]

  bibliothèque de prise en charge de GCC

  dep: libgcc-s1 (>= 3.4) [riscv64]

• dep: libgkarrays1t64 (>= 2.1.0+dfsg)

  library to query large collection of NGS sequences

• dep: libgzstream0 (>= 1.5+dfsg)

  provide functionality of zlib C-library in a C++ iostream

• dep: libhts3t64 (>= 1.17)

  C library for high-throughput sequencing data formats

• dep: libjellyfish-2.0-2 (>= 2.3.1)

  count k-mers in DNA sequences (dynamic library of jellyfish)

• dep: libstdc++6 (>= 13.1) [non arm64]

  bibliothèque standard C++ de GNU v3

  dep: libstdc++6 (>= 14) [arm64]

• dep: zlib1g (>= 1:1.1.4)

  Bibliothèque de compression - binaires

Télécharger crac

Télécharger pour toutes les architectures proposées

Architecture	Version	Taille du paquet	Espace occupé une fois installé	Fichiers
amd64	2.5.2+dfsg-6	453,0 ko	2 270,0 ko	[liste des fichiers]
arm64	2.5.2+dfsg-6+b1	441,1 ko	2 307,0 ko	[liste des fichiers]
mips64el	2.5.2+dfsg-6+b1	472,7 ko	2 481,0 ko	[liste des fichiers]
ppc64el	2.5.2+dfsg-6+b1	480,3 ko	2 436,0 ko	[liste des fichiers]
riscv64	2.5.2+dfsg-6+b1	466,2 ko	2 151,0 ko	[liste des fichiers]