Paquet : r-bioc-gviz (1.48.0+dfsg-1)

[ Paquet source : r-bioc-gviz  ]

Plotting data and annotation information along genomic coordinates

Genomic data analyses requires integrated visualization of known genomic information and new experimental data. Gviz uses the biomaRt and the rtracklayer packages to perform live annotation queries to Ensembl and UCSC and translates this to e.g. gene/transcript structures in viewports of the grid graphics package. This results in genomic information plotted together with your data.

Autres paquets associés à r-bioc-gviz

• dep: r-api-4.0

  paquet virtuel fourni par r-base-core

• dep: r-api-bioc-3.19

  paquet virtuel fourni par r-bioc-biocgenerics

• dep: r-bioc-annotationdbi (>= 1.66.0)

  GNU R Annotation Database Interface pour BioConductor

• dep: r-bioc-biobase (>= 2.64.0)

  fonctions de base pour Bioconductor

• dep: r-bioc-biocgenerics (>= 0.50.0)

  generic functions for Bioconductor

• dep: r-bioc-biomart (>= 2.60.1)

  interface de GNU R aux bases de données BioMart (Ensembl, COSMIC, Wormbase et Gramene)

• dep: r-bioc-biostrings (>= 2.72.1)

  GNU R string objects representing biological sequences

• dep: r-bioc-biovizbase (>= 1.52.0)

  GNU R basic graphic utilities for visualization of genomic data

• dep: r-bioc-bsgenome (>= 1.72.0)

  infrastructure de BioConductor pour les paquets de données de génome basés sur Biostrings

• dep: r-bioc-ensembldb (>= 2.28.0)

  GNU R utilities to create and use an Ensembl based annotation database

• dep: r-bioc-genomeinfodb (>= 1.40.1)

  BioConductor utilities for manipulating chromosome identifiers

• dep: r-bioc-genomicalignments (>= 1.40.0)

  BioConductor representation and manipulation of short genomic alignments

• dep: r-bioc-genomicfeatures (>= 1.56.0)

  GNU R tools for making and manipulating transcript centric annotations

• dep: r-bioc-genomicranges (>= 1.56.1)

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-iranges (>= 2.38.1)

  conteneurs de bas niveau de GNU R de stockage de plages d’entiers

• dep: r-bioc-rsamtools (>= 2.20.0)

  importation de fichiers BAM, BCF et tabix pour GNU R

• dep: r-bioc-rtracklayer (>= 1.64.0)

  GNU R interface to genome browsers and their annotation tracks

• dep: r-bioc-s4vectors (>= 0.42.1)

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-xvector (>= 0.44.0)

  BioConductor representation and manpulation of external sequences

• dep: r-cran-digest (>= 0.6.8)

  GNU R package for 'hash digest' of R data structures

• dep: r-cran-lattice

  paquet GNU R pour les graphes « Trellis »

• dep: r-cran-latticeextra (>= 0.6-26)

  paquet de GNU R d’affichages graphiques supplémentaires basés sur les treillis

• dep: r-cran-matrixstats (>= 0.8.14)

  GNU R methods that apply to rows and columns of a matrix

• dep: r-cran-rcolorbrewer

  paquet de GNU R fournissant des palettes de couleurs adaptées

• sug: r-bioc-biocstyle (>= 2.32.1)

  standard styles for vignettes and other Bioconductor documents

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

• sug: r-cran-testthat

  GNU R testsuite

• sug: r-cran-xml2

  analyseur XML pour GNU R

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