Paquet : seqprep (1.3.2-8)

[ Paquet source : seqprep  ]

stripping adaptors and/or merging paired reads of DNA sequences with overlap

SeqPrep is a program to merge paired end Illumina reads that are overlapping into a single longer read. It may also just be used for its adapter trimming feature without doing any paired end overlap. When an adapter sequence is present, that means that the two reads must overlap (in most cases) so they are forcefully merged. When reads do not have adapter sequence they must be treated with care when doing the merging, so a much more specific approach is taken. The default parameters were chosen with specificity in mind, so that they could be ran on libraries where very few reads are expected to overlap. It is always safest though to save the overlapping procedure for libraries where you have some prior knowledge that a significant portion of the reads will have some overlap.

Autres paquets associés à seqprep

• dep: libc6 (>= 2.34)

  bibliothèque C GNU : bibliothèques partagées
  un paquet virtuel est également fourni par libc6-udeb

• dep: zlib1g (>= 1:1.1.4)

  Bibliothèque de compression - binaires

Télécharger seqprep

Télécharger pour toutes les architectures proposées

Architecture	Taille du paquet	Espace occupé une fois installé	Fichiers
amd64	27,4 ko	95,0 ko	[liste des fichiers]
arm64	25,8 ko	103,0 ko	[liste des fichiers]
armel	27,7 ko	166,0 ko	[liste des fichiers]
armhf	26,2 ko	102,0 ko	[liste des fichiers]
i386	27,2 ko	90,0 ko	[liste des fichiers]
mips64el	26,6 ko	169,0 ko	[liste des fichiers]
mipsel	26,8 ko	168,0 ko	[liste des fichiers]
ppc64el	26,3 ko	103,0 ko	[liste des fichiers]
s390x	26,5 ko	103,0 ko	[liste des fichiers]