Paquet : q2-alignment (2022.11.1-2)

[ Paquet source : q2-alignment  ]

QIIME 2 plugin for generating and manipulating alignments

QIIME 2 is a powerful, extensible, and decentralized microbiome analysis package with a focus on data and analysis transparency. QIIME 2 enables researchers to start an analysis with raw DNA sequence data and finish with publication-quality figures and statistical results. Key features:

 * Integrated and automatic tracking of data provenance
 * Semantic type system
 * Plugin system for extending microbiome analysis functionality
 * Support for multiple types of user interfaces (e.g. API, command line,

graphical)

QIIME 2 is a complete redesign and rewrite of the QIIME 1 microbiome analysis pipeline. QIIME 2 will address many of the limitations of QIIME 1, while retaining the features that makes QIIME 1 a powerful and widely-used analysis pipeline.

QIIME 2 currently supports an initial end-to-end microbiome analysis pipeline. New functionality will regularly become available through QIIME 2 plugins. You can view a list of plugins that are currently available on the QIIME 2 plugin availability page. The future plugins page lists plugins that are being developed.

Autres paquets associés à q2-alignment

• dep: mafft

  programme d'alignement multiple pour des séquences de nucléotides ou d'acides aminés

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-setuptools

  Améliorations de Python3 Distutils

• dep: python3-skbio

  Python3 data structures, algorithms, educational resources for bioinformatic

• dep: q2-types (>= 2022.11.1)

  QIIME 2 plugin defining types for microbiome analysis

• dep: qiime (>= 2022.11.1)

  QIIME, Quantitative Insights Into Microbial Ecology

• sug: sina

  Paquet indisponible

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Architecture	Taille du paquet	Espace occupé une fois installé	Fichiers
all	11,5 ko	68,0 ko	[liste des fichiers]