Paketti: kallisto (0.48.0+dfsg-4 ja muut)

[ Source: kallisto  ]

near-optimal RNA-Seq quantification

Kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the novel idea of pseudoalignment for rapidly determining the compatibility of reads with targets, without the need for alignment. On benchmarks with standard RNA-Seq data, kallisto can quantify 30 million human reads in less than 3 minutes on a Mac desktop computer using only the read sequences and a transcriptome index that itself takes less than 10 minutes to build. Pseudoalignment of reads preserves the key information needed for quantification, and kallisto is therefore not only fast, but also as accurate than existing quantification tools. In fact, because the pseudoalignment procedure is robust to errors in the reads, in many benchmarks kallisto significantly outperforms existing tools.

Muut pakettiin kallisto liittyvät paketit

• dep: libc6 (>= 2.34) [ei arm64]

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

  dep: libc6 (>= 2.38) [arm64]

• dep: libgcc-s1 (>= 3.0) [ei ppc64el, riscv64]

  GCC:n apukirjasto

  dep: libgcc-s1 (>= 3.4) [riscv64]

  dep: libgcc-s1 (>= 3.4.4) [ppc64el]

• dep: libhts3t64 (>= 1.17)

  C library for high-throughput sequencing data formats

• dep: libstdc++6 (>= 13.1)

  GNU standardi C++ -kirjasto, versio 3

• dep: zlib1g (>= 1:1.1.4)

  pakkauskirjaston ajonaikaistiedostot

Imuroi kallisto

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Versio	Paketin koko	Koko asennettuna	Tiedostot
amd64	0.48.0+dfsg-4+b1	279.7 kt	805.0 kt	[tiedostoluettelo]
arm64	0.48.0+dfsg-4+b2	250.3 kt	789.0 kt	[tiedostoluettelo]
mips64el	0.48.0+dfsg-4+b3	239.4 kt	883.0 kt	[tiedostoluettelo]
ppc64el	0.48.0+dfsg-4+b1	284.1 kt	917.0 kt	[tiedostoluettelo]
riscv64	0.48.0+dfsg-4+b2	270.6 kt	625.0 kt	[tiedostoluettelo]
s390x	0.48.0+dfsg-4+b1	280.6 kt	833.0 kt	[tiedostoluettelo]