Paketti: fasta3 (36.3.8i.14-Nov-2020-1 ja muut)
Links for fasta3
Debian-palvelut:
Imuroi lähdekoodipaketti fasta3:
- [fasta3_36.3.8i.14-Nov-2020-1.dsc]
- [fasta3_36.3.8i.14-Nov-2020.orig.tar.gz]
- [fasta3_36.3.8i.14-Nov-2020-1.debian.tar.xz]
Ylläpitäjät:
External Resources:
- Kotisivu [fasta.bioch.virginia.edu]
Samankaltaisia paketteja:
tools for searching collections of biological sequences
The FASTA programs find regions of local or global similarity between Protein or DNA sequences, either by searching Protein or DNA databases, or by identifying local duplications within a sequence. Other programs provide information on the statistical significance of an alignment. Like BLAST, FASTA can be used to infer functional and evolutionary relationships between sequences as well as help identify members of gene families.
* Protein - Protein-protein FASTA - Protein-protein Smith-Waterman (ssearch) - Global Protein-protein (Needleman-Wunsch) (ggsearch) - Global/Local protein-protein (glsearch) - Protein-protein with unordered peptides (fasts) - Protein-protein with mixed peptide sequences (fastf)
* Nucleotide - Nucleotide-Nucleotide (DNA/RNA fasta) - Ordered Nucleotides vs Nucleotide (fastm) - Un-ordered Nucleotides vs Nucleotide (fasts)
* Translated - Translated DNA (with frameshifts, e.g. ESTs) vs Proteins (fastx/fasty) - Protein vs Translated DNA (with frameshifts) (tfastx/tfasty) - Peptides vs Translated DNA (tfasts)
* Statistical Significance - Protein vs Protein shuffle (prss) - DNA vs DNA shuffle (prss) - Translated DNA vs Protein shuffle (prfx)
* Local Duplications - Local Protein alignments (lalign) - Plot Protein alignment "dot-plot" (plalign) - Local DNA alignments (lalign) - Plot DNA alignment "dot-plot" (plalign)
This software is often used via a web service at the EBI with readily indexed reference databases at http://www.ebi.ac.uk/Tools/fasta/.
Muut pakettiin fasta3 liittyvät paketit
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- dep: libc6 (>= 2.34)
- GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- rec: r-base-core
- GNU R core of statistical computation and graphics system
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- sug: bedtools
- suite of utilities for comparing genomic features
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- sug: libdbd-mysql-perl
- Perl5 database interface to the MariaDB/MySQL database
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- sug: libdbi-perl
- Perl Database Interface (DBI)
-
- sug: libhtml-tableextract-perl
- module for extracting the content contained in HTML tables
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- sug: libjson-perl
- module for manipulating JSON-formatted data
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- sug: liburi-encode-perl
- Perl module to encode and decode strings to URIs
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- sug: libwww-perl
- simple and consistent interface to the world-wide web
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- sug: libxml-twig-perl
- Perl module for processing huge XML documents in tree mode
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- sug: ncbi-blast+
- next generation suite of BLAST sequence search tools
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- sug: perl
- Larry Wallin kieli tekstitiedostojen analysointia ja raportointia varten
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- sug: python3-mysqldb
- Python interface to MySQL
Imuroi fasta3
Arkkitehtuuri | Versio | Paketin koko | Koko asennettuna | Tiedostot |
---|---|---|---|---|
amd64 | 36.3.8i.14-Nov-2020-1 | 902.2 kt | 6,970.0 kt | [tiedostoluettelo] |
arm64 | 36.3.8i.14-Nov-2020-1 | 805.2 kt | 6,702.0 kt | [tiedostoluettelo] |
armel | 36.3.8i.14-Nov-2020-1 | 807.9 kt | 6,924.0 kt | [tiedostoluettelo] |
armhf | 36.3.8i.14-Nov-2020-1 | 771.9 kt | 5,324.0 kt | [tiedostoluettelo] |
i386 | 36.3.8i.14-Nov-2020-1 | 853.3 kt | 6,924.0 kt | [tiedostoluettelo] |
mips64el | 36.3.8i.14-Nov-2020-1 | 809.3 kt | 6,742.0 kt | [tiedostoluettelo] |
ppc64el | 36.3.8i.14-Nov-2020-1 | 884.6 kt | 8,238.0 kt | [tiedostoluettelo] |
riscv64 | 36.3.8i.14-Nov-2020-1+b1 | 1,005.6 kt | 5,915.0 kt | [tiedostoluettelo] |
s390x | 36.3.8i.14-Nov-2020-1 | 826.1 kt | 6,836.0 kt | [tiedostoluettelo] |