Paketti: murasaki-mpi (1.68.6-14) [debports]

[ Source:  ]

homology detection tool across multiple large genomes (MPI-version)

Murasaki is a scalable and fast, language theory-based homology detection tool across multiple large genomes. It enable whole-genome scale multiple genome global alignments. Supports unlimited length gapped-seed patterns and unique TF-IDF based filtering.

Murasaki is an anchor alignment software, which is

 * exteremely fast (17 CPU hours for whole Human x Mouse genome (with
   40 nodes: 52 wall minutes))
 * scalable (Arbitrarily parallelizable across multiple nodes using MPI.
   Even a single node with 16GB of ram can handle over 1Gbp of sequence.)
 * unlimited pattern length
 * repeat tolerant
 * intelligent noise reduction

This package provides the MPI-enabled binary for murasaki. While this will speed up operation on multi-processor machines it will slow down on a single processor.

Muut pakettiin murasaki-mpi liittyvät paketit

• dep: libboost-filesystem1.83.0 (>= 1.83.0)

  filesystem operations (portable paths, iteration over directories, etc) in C++

• dep: libboost-iostreams1.83.0 (>= 1.83.0)

  Boost.Iostreams -kirjasto

• dep: libc6 (>= 2.40)

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

• dep: libgcc-s1 (>= 3.4)

  GCC:n apukirjasto

• dep: libmpich12

  Shared libraries for MPICH

• dep: libstdc++6 (>= 14)

  GNU standardi C++ -kirjasto, versio 3

• dep: murasaki-common

  homology detection tool across multiple large genomes (common files)

Imuroi murasaki-mpi

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
sh4 (epävirallinen siirros)	644.5 kt	4,173.0 kt	[tiedostoluettelo]