Paketti: mcaller (1.0.3+git20210624.b415090-3)

[ Source: mcaller  ]

find methylation in nanopore reads

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This program is designed to call m6A from nanopore data using the differences between measured and expected currents.

Muut pakettiin mcaller liittyvät paketit

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-biopython

  Python3 library for bioinformatics

• dep: python3-h5py

  general-purpose Python interface to hdf5

• dep: python3-matplotlib

  Python based plotting system in a style similar to Matlab

• dep: python3-numpy

  Fast array facility to the Python language (Python 3)

• dep: python3-pandas

  data structures for "relational" or "labeled" data

• dep: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: python3-scipy

  scientific tools for Python 3

• dep: python3-seaborn

  statistical visualization library for Python3

• dep: python3-sklearn

  Python modules for machine learning and data mining - Python 3

• rec: nanopolish

  consensus caller for nanopore sequencing data

  tai poretools

  toolkit for nanopore nucleotide sequencing data

• sug: bwa

  Burrows-Wheeler Aligner

• sug: graphmap

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Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
all	18.5 kt	83.0 kt	[tiedostoluettelo]