Paketti: python3-cooler (0.10.2-1 ja muut)

[ Source: python-cooler  ]

library for a sparse, compressed, binary persistent storage

Cooler is a support library for a sparse, compressed, binary persistent storage format, also called cooler, used to store genomic interaction data, such as Hi-C contact matrices.

The cooler file format is an implementation of a genomic matrix data model using HDF5 as the container format. The cooler package includes a suite of command line tools and a Python API to facilitate creating, querying and manipulating cooler files.

Muut pakettiin python3-cooler liittyvät paketit

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-asciitree

  Draw tree structures using (ASCII or Unicode) characters

• dep: python3-biopython

  Python3 library for bioinformatics

• dep: python3-click

  Command-Line Interface Creation Kit - Python 3.x

• dep: python3-cytoolz

  Toolz in Cython: High performance functional utilities

• dep: python3-h5py (>= 2.5)

  general-purpose Python interface to hdf5

• dep: python3-multiprocess

  better multiprocessing and multithreading in Python

• dep: python3-numpy

  Fast array facility to the Python language (Python 3)

• dep: python3-pairix

  1D/2D indexing and querying with a pair of genomic coordinates

• dep: python3-pandas [ppc64]

  data structures for "relational" or "labeled" data

  dep: python3-pandas (>= 2.1) [ei ppc64]

• dep: python3-pyfaidx

  efficient random access to fasta subsequences for Python 3

• dep: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• dep: python3-scipy (>= 1.10~)

  scientific tools for Python 3

• dep: python3-simplejson

  simple, fast, extensible JSON encoder/decoder for Python 3.x

• dep: python3-six [ppc64]

  Python 2 and 3 compatibility library

• dep: python3-yaml

  YAML parser and emitter for Python3

• rec: python3-dask

  Minimal task scheduling abstraction for Python 3

• sug: python3-pip

  Python package installer

Imuroi python3-cooler

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Versio	Paketin koko	Koko asennettuna	Tiedostot
alpha (epävirallinen siirros)	0.10.2-1	85.9 kt	399.0 kt	[tiedostoluettelo]
amd64	0.10.2-1	85.9 kt	399.0 kt	[tiedostoluettelo]
arm64	0.10.2-1	85.9 kt	399.0 kt	[tiedostoluettelo]
mips64el	0.10.2-1	85.9 kt	399.0 kt	[tiedostoluettelo]
ppc64 (epävirallinen siirros)	0.9.1-1	83.7 kt	383.0 kt	[tiedostoluettelo]
ppc64el	0.10.2-1	85.9 kt	399.0 kt	[tiedostoluettelo]
riscv64	0.10.2-1	85.9 kt	399.0 kt	[tiedostoluettelo]