Paketti: srst2 (0.1.8-1) [debports]

[ Source:  ]

Short Read Sequence Typing for Bacterial Pathogens

This program is designed to take Illumina sequence data, a MLST database and/or a database of gene sequences (e.g. resistance genes, virulence genes, etc) and report the presence of STs and/or reference genes.

Muut pakettiin srst2 liittyvät paketit

• dep: bowtie2

  ultrafast memory-efficient short read aligner

• dep: cd-hit

  suite of programs designed to quickly group sequences

• dep: python

  Paketti ei saatavilla

• dep: python-biopython

  Python library for bioinformatics (implemented in Python 2)

• dep: python-scipy

  Paketti ei saatavilla

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

Imuroi srst2

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
hppa (epävirallinen siirros)	58.6 kt	258.0 kt	[tiedostoluettelo]