Package: srst2 (0.1.8-1) [debports]

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Homepage [katholt.github.io]

Similar packages:

Short Read Sequence Typing for Bacterial Pathogens

This program is designed to take Illumina sequence data, a MLST database and/or a database of gene sequences (e.g. resistance genes, virulence genes, etc) and report the presence of STs and/or reference genes.

Other Packages Related to srst2

depends

recommends

suggests

enhances

dep: bowtie2

ultrafast memory-efficient short read aligner
dep: cd-hit

suite of programs designed to quickly group sequences
dep: python

Package not available
dep: python-biopython

Python library for bioinformatics (implemented in Python 2)
dep: python-scipy

Package not available
dep: samtools

processing sequence alignments in SAM, BAM and CRAM formats

Download srst2

Download for all available architectures
Architecture	Package Size	Installed Size	Files
hppa (unofficial port)	58.6 kB	258.0 kB	[list of files]