Paketti: libtfbs-perl (0.7.1+ds-4 ja muut)

[ Source: libtfbs-perl  ]

scanning DNA sequence with a position weight matrix

The TFBS perl modules comprise a set of routines to interact with the Transfac and Jaspar databases that describe a special family of proteins, the transcription factors. These bind to genomic DNA to initiate (or prevent) the readout of a gene. Once multiple binding sites are known for a transcription factor, these are gathered in a single file and are aligned in order to find position-specific characteristica that might be used to predict such binding events in novel DNA sequences.

If you use TFBS in your work, please cite "Lenhard B., Wasserman W.W. (2002) TFBS: Computational framework for transcription factor binding site analysis. Bioinformatics 18:1135-1136".

Note: the TFBS perl module is no longer under active development. All the functionality can be found in the TFBSTools Bioconductor package; users are highly encouraged to switch. <http://bioconductor.org/packages/TFBSTools/>

Tagit: Software Development: Perl Development, Kirjastot, Field: field::biology, field::biology:bioinformatics, Implemented in: C, implemented-in::perl, interface::commandline, Role: Development Library, Program

Muut pakettiin libtfbs-perl liittyvät paketit

• dep: bioperl

  Perl tools for computational molecular biology

• dep: libc6 (>= 2.38)

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

• dep: libdbi-perl

  Perl Database Interface (DBI)

• dep: libwww-perl

  simple and consistent interface to the world-wide web

• dep: pdl (>= 1:2.093-1+b1)

  perl data language: Perl extensions for numerics

• dep: pdlapi-20

  näennäispaketti, jonka toteuttaa pdl

• dep: perl (>= 5.40.0-6)

  Larry Wallin kieli tekstitiedostojen analysointia ja raportointia varten

• dep: perlapi-5.40.0

  näennäispaketti, jonka toteuttaa perl-base

• rec: libgd-gd2-perl

  näennäispaketti, jonka toteuttaa libgd-perl

  tai libgd-gd2-noxpm-perl

  näennäispaketti, jonka toteuttaa libgd-perl

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Arkkitehtuuri	Versio	Paketin koko	Koko asennettuna	Tiedostot
armel	0.7.1+ds-4+b1	217.6 kt	981.0 kt	[tiedostoluettelo]