Package: libtfbs-perl (0.7.1+ds-4 and others)
Links for libtfbs-perl
Debian Resources:
Download Source Package libtfbs-perl:
- [libtfbs-perl_0.7.1+ds-4.dsc]
- [libtfbs-perl_0.7.1+ds.orig.tar.xz]
- [libtfbs-perl_0.7.1+ds-4.debian.tar.xz]
Maintainers:
- Debian Med Packaging Team (QA Page, Mail Archive)
- Steffen Moeller (QA Page)
- Charles Plessy (QA Page)
- Andreas Tille (QA Page)
External Resources:
- Homepage [tfbs.genereg.net]
Similar packages:
scanning DNA sequence with a position weight matrix
The TFBS perl modules comprise a set of routines to interact with the Transfac and Jaspar databases that describe a special family of proteins, the transcription factors. These bind to genomic DNA to initiate (or prevent) the readout of a gene. Once multiple binding sites are known for a transcription factor, these are gathered in a single file and are aligned in order to find position-specific characteristica that might be used to predict such binding events in novel DNA sequences.
If you use TFBS in your work, please cite "Lenhard B., Wasserman W.W. (2002) TFBS: Computational framework for transcription factor binding site analysis. Bioinformatics 18:1135-1136".
Note: the TFBS perl module is no longer under active development. All the functionality can be found in the TFBSTools Bioconductor package; users are highly encouraged to switch. <http://bioconductor.org/packages/TFBSTools/>
Other Packages Related to libtfbs-perl
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- dep: bioperl
- Perl tools for computational molecular biology
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- dep: libc6 (>= 2.38)
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also a virtual package provided by libc6-udeb
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- dep: libdbi-perl
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- dep: perl (>= 5.40.0-6)
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- dep: perlapi-5.40.0
- virtual package provided by perl-base
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- rec: libgd-gd2-perl
- virtual package provided by libgd-perl
- or libgd-gd2-noxpm-perl
- virtual package provided by libgd-perl
Download libtfbs-perl
Architecture | Version | Package Size | Installed Size | Files |
---|---|---|---|---|
armel | 0.7.1+ds-4+b1 | 217.6 kB | 981.0 kB | [list of files] |