Paketti: salmon (0.12.0+ds1-1 ja muut)

[ Source: salmon  ]

wicked-fast transcript quantification from RNA-seq data

Salmon is a wicked-fast program to produce a highly-accurate, transcript-level quantification estimates from RNA-seq data. Salmon achieves is accuracy and speed via a number of different innovations, including the use of lightweight alignments (accurate but fast-to-compute proxies for traditional read alignments) and massively-parallel stochastic collapsed variational inference. The result is a versatile tool that fits nicely into many different pipelines. For example, you can choose to make use of the lightweight alignments by providing Salmon with raw sequencing reads, or, if it is more convenient, you can provide Salmon with regular alignments (e.g. computed with your favorite aligner), and it will use the same wicked-fast, state-of-the-art inference algorithm to estimate transcript-level abundances for your experiment.

Muut pakettiin salmon liittyvät paketit

• dep: libboost-chrono1.67.0

  C++ representation of time duration, time point, and clocks

• dep: libboost-filesystem1.67.0

  filesystem operations (portable paths, iteration over directories, etc) in C++

• dep: libboost-iostreams1.67.0

  Boost.Iostreams -kirjasto

• dep: libboost-program-options1.67.0

  program options library for C++

• dep: libboost-regex1.67.0 (>= 1.67.0-10)

  regular expression library for C++

• dep: libboost-system1.67.0

  Operating system (e.g. diagnostics support) library

• dep: libboost-timer1.67.0

  C++ wall clock and CPU process timers

• dep: libbz2-1.0

  high-quality block-sorting file compressor library - runtime

• dep: libc6 (>= 2.14)

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

• dep: libdivsufsort3 (>= 2.0.1)

  fast suffix array construction

• dep: libgcc1 (>= 1:3.4)

  GCC:n apukirjasto

• dep: libgomp1 (>= 4.2.1)

  GCC OpenMP (GOMP) support library

• dep: libjemalloc2 (>= 5.0.0)

  general-purpose scalable concurrent malloc(3) implementation

• dep: libjs-sphinxdoc (>= 1.0)

  JavaScript support for Sphinx documentation

• dep: liblzma5 (>= 5.1.1alpha+20110809)

  XZ-tiedostomuodon pakkauskirjasto

• dep: libstaden-read13

  Staden library for reading and writing DNA sequencing results

• dep: libstdc++6 (>= 7)

  GNU standardi C++ -kirjasto, versio 3

• dep: libtbb2 (>= 2017~U7)

  parallelism library for C++ - runtime files

• dep: sphinx-rtd-theme-common (>= 0.4.2+dfsg)

  sphinx theme from readthedocs.org (common files)

• dep: zlib1g (>= 1:1.1.4)

  pakkauskirjaston ajonaikaistiedostot

Imuroi salmon

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Versio	Paketin koko	Koko asennettuna	Tiedostot
amd64	0.12.0+ds1-1+b1	1,322.1 kt	8,746.0 kt	[tiedostoluettelo]