Paketti: changeo (0.4.5-1)

[ Source: changeo  ]

Repertoire clonal assignment toolkit (Python 3)

Change-O is a collection of tools for processing the output of V(D)J alignment tools, assigning clonal clusters to immunoglobulin (Ig) sequences, and reconstructing germline sequences.

Dramatic improvements in high-throughput sequencing technologies now enable large-scale characterization of Ig repertoires, defined as the collection of trans-membrane antigen-receptor proteins located on the surface of B cells and T cells. Change-O is a suite of utilities to facilitate advanced analysis of Ig and TCR sequences following germline segment assignment. Change-O handles output from IMGT/HighV-QUEST and IgBLAST, and provides a wide variety of clustering methods for assigning clonal groups to Ig sequences. Record sorting, grouping, and various database manipulation operations are also included.

This package installs the library for Python 3.

Muut pakettiin changeo liittyvät paketit

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-biopython

  Python library for bioinformatics (implemented in Python 3)

• dep: python3-numpy

  Fast array facility to the Python 3 language

• dep: python3-pandas

  data structures for "relational" or "labeled" data - Python 3

• dep: python3-pkg-resources

  Package Discovery and Resource Access using pkg_resources

• dep: python3-scipy

  scientific tools for Python 3

• dep: python3-yaml

  YAML parser and emitter for Python3

• rec: python3-airr

  Data Representation Standard library for antibody and TCR sequences

• rec: python3-biopython (>= 1.65)

  Python library for bioinformatics (implemented in Python 3)

• rec: python3-pandas (>= 0.15)

  data structures for "relational" or "labeled" data - Python 3

• rec: python3-presto

  toolkit for processing B and T cell sequences

• rec: python3-scipy (>= 0.14)

  scientific tools for Python 3

Imuroi changeo

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Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
all	88.0 kt	620.0 kt	[tiedostoluettelo]