Paketti: python3-presto (0.5.10-1)

[ Source: presto  ]

toolkit for processing B and T cell sequences

pRESTO is a toolkit for processing raw reads from high-throughput sequencing of B cell and T cell repertoires.

Dramatic improvements in high-throughput sequencing technologies now enable large-scale characterization of lymphocyte repertoires, defined as the collection of trans-membrane antigen-receptor proteins located on the surface of B cells and T cells. The REpertoire Sequencing TOolkit (pRESTO) is composed of a suite of utilities to handle all stages of sequence processing prior to germline segment assignment. pRESTO is designed to handle either single reads or paired-end reads. It includes features for quality control, primer masking, annotation of reads with sequence embedded barcodes, generation of unique molecular identifier (UMI) consensus sequences, assembly of paired-end reads and identification of duplicate sequences. Numerous options for sequence sorting, sampling and conversion operations are also included.

Muut pakettiin python3-presto liittyvät paketit

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-biopython (>= 1.65)

  Python library for bioinformatics (implemented in Python 3)

• dep: python3-numpy (>= 1.8)

  Fast array facility to the Python 3 language

• dep: python3-pandas (>= 0.15)

  data structures for "relational" or "labeled" data - Python 3

• dep: python3-scipy (>= 0.14)

  scientific tools for Python 3

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