Paketti: murasaki (1.68.6-8 ja muut)

[ Source: murasaki  ]

homology detection tool across multiple large genomes

Murasaki is a scalable and fast, language theory-based homology detection tool across multiple large genomes. It enable whole-genome scale multiple genome global alignments. Supports unlimited length gapped-seed patterns and unique TF-IDF based filtering.

Murasaki is an anchor alignment software, which is

 * exteremely fast (17 CPU hours for whole Human x Mouse genome (with
   40 nodes: 52 wall minutes))
 * scalable (Arbitrarily parallelizable across multiple nodes using MPI.
   Even a single node with 16GB of ram can handle over 1Gbp of sequence.)
 * unlimited pattern length
 * repeat tolerant
 * intelligent noise reduction

Muut pakettiin murasaki liittyvät paketit

• dep: libboost-filesystem1.67.0

  filesystem operations (portable paths, iteration over directories, etc) in C++

• dep: libboost-iostreams1.67.0

  Boost.Iostreams -kirjasto

• dep: libboost-regex1.67.0 (>= 1.67.0-10)

  regular expression library for C++

• dep: libboost-system1.67.0

  Operating system (e.g. diagnostics support) library

• dep: libc6 (>= 2.3.6-6~)

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

• dep: libcrypto++6

  General purpose cryptographic library - shared library

• dep: libgcc1 (>= 1:4.2)

  GCC:n apukirjasto

• dep: libstdc++6 (>= 5.2)

  GNU standardi C++ -kirjasto, versio 3

• dep: murasaki-common

  homology detection tool across multiple large genomes (common files)

Imuroi murasaki

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Versio	Paketin koko	Koko asennettuna	Tiedostot
i386	1.68.6-8+b1	512.8 kt	3,197.0 kt	[tiedostoluettelo]