Paketti: augustus (3.3.2+dfsg-2)

[ Source: augustus  ]

gene prediction in eukaryotic genomes

AUGUSTUS is a software for gene prediction in eukaryotic genomic sequences that is based on a generalized hidden Markov model (HMM), a probabilistic model of a sequence and its gene structure. After learning gene structures from a reference annotation, AUGUSTUS uses the HMM to recognize genes in a new sequence and annotates it with the regions of identified genes. External hints, e.g. from RNA sequencing, EST or protein alignments etc. can be used to guide and improve the gene finding process. The result is the set of most likely gene structures that comply with all given user constraints, if such gene structures exist. AUGUSTUS already includes prebuilt HMMs for many species, as well as scripts to train custom models using annotated genomes.

Tagit: Field: Biology, Bioinformatics, Implemented in: implemented-in::c++, interface::commandline, Role: Program, Tiede: science::calculation, scope::utility, Interface Toolkit: Ncurses TUI, Purpose: use::analysing, works-with::biological-sequence

Muut pakettiin augustus liittyvät paketit

• dep: augustus-data

  data files for AUGUSTUS

• dep: libbamtools2.5.1

  dynamic library for manipulating BAM (genome alignment) files

• dep: libbz2-1.0

  high-quality block-sorting file compressor library - runtime

• dep: libc6 (>= 2.15) [ei arm64]

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

  dep: libc6 (>= 2.17) [arm64]

• dep: libcurl3-nss (>= 7.23.1)

  easy-to-use client-side URL transfer library (NSS flavour)

• dep: libgcc1 (>= 1:3.0) [amd64]

  GCC:n apukirjasto

  dep: libgcc1 (>= 1:3.5) [armhf]

  dep: libgcc1 (>= 1:4.5) [arm64]

• dep: libhts2 (>= 1.0)

  C library for high-throughput sequencing data formats

• dep: liblzma5 (>= 5.1.1alpha+20110809)

  XZ-tiedostomuodon pakkauskirjasto

• dep: libncurses6 (>= 6)

  jaetut kirjastot päätteen hallintaan

• dep: libssl1.1 (>= 1.1.0)

  Secure Sockets Layer -työkalupakki - jaetut kirjastot

• dep: libstdc++6 (>= 6)

  GNU standardi C++ -kirjasto, versio 3

• dep: libtinfo6 (>= 6)

  Jaettu matalan abstraktiotason terminfo-kirjasto päätteen käsittelyyn

• dep: zlib1g (>= 1:1.2.3.3)

  pakkauskirjaston ajonaikaistiedostot

Imuroi augustus

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
amd64	1,134.7 kt	4,787.0 kt	[tiedostoluettelo]
arm64	992.1 kt	4,349.0 kt	[tiedostoluettelo]
armhf	952.2 kt	3,255.0 kt	[tiedostoluettelo]