Paketti: gbrowse (2.56+dfsg-4)

[ Source: gbrowse  ]

GMOD Generic Genome Browser

Generic Genome Browser is a simple but highly configurable web-based genome browser. It is a component of the Generic Model Organism Systems Database project (GMOD). Some of its features:

 * Simultaneous bird's eye and detailed views of the genome;
 * Scroll, zoom, center;
 * Attach arbitrary URLs to any annotation;
 * Order and appearance of tracks are customizable by administrator and
   end-user;
 * Search by annotation ID, name, or comment;
 * Supports third party annotation using GFF formats;
 * Settings persist across sessions;
 * DNA and GFF dumps;
 * Connectivity to different databases, including BioSQL and Chado;
 * Multi-language support;
 * Third-party feature loading;
 * Customizable plug-in architecture (e.g. run BLAST, dump & import many
   formats, find oligonucleotides, design primers, create restriction maps,
   edit features).

Tagit: Field: Biology, Bioinformatics, Implemented in: implemented-in::perl, interface::web, Role: Program, Purpose: Analysing, use::viewing, web::application, World Wide Web: CGI

Muut pakettiin gbrowse liittyvät paketit

• dep: apache2 (>= 2.4)

  Apache HTTP Server

  tai httpd-cgi

  näennäispaketti, jonka toteuttaa apache2, lighttpd, mini-httpd, nginx-extras, nginx-full, nginx-light, tntnet, yaws

• dep: bioperl

  Perl tools for computational molecular biology

• dep: libbio-coordinate-perl

  BioPerl modules for working with biological coordinates

• dep: libbio-graphics-perl (>= 2.31)

  Generate GD images of Bio::Seq objects

• dep: libcgi-session-perl

  persistent session data in CGI applications

• dep: libdbd-sqlite3-perl

  Perl DBI driver with a self-contained RDBMS

• dep: libgd-gd2-noxpm-perl

  näennäispaketti, jonka toteuttaa libgd-perl

  tai libgd-gd2-perl

  näennäispaketti, jonka toteuttaa libgd-perl

• dep: libhttp-daemon-perl

  simple http server class

• dep: libio-string-perl

  Emulate IO::File interface for in-core strings

• dep: libjs-prototype

  JavaScript Framework for dynamic web applications

• dep: libjs-scriptaculous

  JavaScript library for dynamic web applications

• dep: libjson-perl

  module for manipulating JSON-formatted data

• dep: libstatistics-descriptive-perl

  Perl module for basic descriptive statistical functions

• dep: libterm-readkey-perl

  perl module for simple terminal control

• dep: libvm-ec2-perl

  module providing controls on Amazon EC2 and Eucalyptus

• dep: libwww-perl

  simple and consistent interface to the world-wide web

• dep: lsb-base

  Linux-standardipohjan käynnistysskriptitoiminnot

• dep: perl

  Larry Wallin kieli tekstitiedostojen analysointia ja raportointia varten

• dep: sqlite3

  Command line interface for SQLite 3

• rec: apache2 (>= 2.4.6-4~)

  Apache HTTP Server

  tai httpd

  näennäispaketti, jonka toteuttaa apache2, ebhttpd, lighttpd, micro-httpd, mini-httpd, nginx-extras, nginx-full, nginx-light, tntnet, webfs, yaws

• sug: gbrowse-calign

  CAlign helper

• sug: gbrowse-data

  Sample data to use GBrowse

• sug: libfile-nfslock-perl

  perl module to do NFS (or not) locking

Imuroi gbrowse

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