Paketti: bali-phy (3.4+dfsg-1)

[ Source: bali-phy  ]

Bayesian Inference of Alignment and Phylogeny

BAli-Phy estimates multiple sequence alignments and evolutionary trees from unaligned DNA, amino acid, or codon sequences. BAli-Phy uses MCMC to estimate evolutionary trees, positive selection, and branch lengths while averaging over alternative alignments. BAli-Phy can display alignment ambiguity graphically in an alignment uncertainty (AU) plot.

BAli-Phy can also estimate phylogenies from a fixed alignment (like MrBayes and BEAST) using substitution models like GTR+gamma. BAli-Phy automatically estimates relative rates for each gene.

Muut pakettiin bali-phy liittyvät paketit

• dep: libboost-chrono1.67.0

  C++ representation of time duration, time point, and clocks

• dep: libboost-filesystem1.67.0

  filesystem operations (portable paths, iteration over directories, etc) in C++

• dep: libboost-program-options1.67.0

  program options library for C++

• dep: libboost-random1.67.0

  Boost Random Number Library

• dep: libboost-system1.67.0

  Operating system (e.g. diagnostics support) library

• dep: libc6 (>= 2.23)

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

• dep: libcairo2 (>= 1.4.10)

  Cairo 2D vector graphics library

• dep: libgcc1 (>= 1:3.4)

  GCC:n apukirjasto

• dep: libstdc++6 (>= 5.2)

  GNU standardi C++ -kirjasto, versio 3

• dep: perl

  Larry Wallin kieli tekstitiedostojen analysointia ja raportointia varten

• rec: gnuplot

  Command-line driven interactive plotting program.
  myös näennäispaketti, jonka toteuttaa gnuplot-nox, gnuplot-qt, gnuplot-x11

• rec: r-base

  GNU R statistical computation and graphics system

• sug: figtree

  graphical phylogenetic tree viewer

• sug: seaview

  Multiplatform interface for sequence alignment and phylogeny

Imuroi bali-phy

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
amd64	5,017.5 kt	25,561.0 kt	[tiedostoluettelo]