Package: bali-phy (3.4+dfsg-1)

[ Source: bali-phy  ]

Bayesian Inference of Alignment and Phylogeny

BAli-Phy estimates multiple sequence alignments and evolutionary trees from unaligned DNA, amino acid, or codon sequences. BAli-Phy uses MCMC to estimate evolutionary trees, positive selection, and branch lengths while averaging over alternative alignments. BAli-Phy can display alignment ambiguity graphically in an alignment uncertainty (AU) plot.

BAli-Phy can also estimate phylogenies from a fixed alignment (like MrBayes and BEAST) using substitution models like GTR+gamma. BAli-Phy automatically estimates relative rates for each gene.

Other Packages Related to bali-phy

• dep: libboost-chrono1.67.0

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• dep: libboost-filesystem1.67.0

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• dep: libboost-program-options1.67.0

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• dep: libboost-random1.67.0

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• dep: libboost-system1.67.0

  Operating system (e.g. diagnostics support) library

• dep: libc6 (>= 2.23)

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• dep: libcairo2 (>= 1.4.10)

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• dep: libgcc1 (>= 1:3.4)

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• dep: libstdc++6 (>= 5.2)

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• dep: perl

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• rec: gnuplot

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• sug: figtree

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• sug: seaview

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Architecture	Package Size	Installed Size	Files
amd64	5,017.5 kB	25,561.0 kB	[list of files]