Paketti: theseus (3.3.0-9)

[ Source: theseus  ]

superimpose macromolecules using maximum likelihood

Theseus is a program that simultaneously superimposes multiple macromolecular structures. Theseus finds the optimal solution to the superposition problem using the method of maximum likelihood. By down-weighting variable regions of the superposition and by correcting for correlations among atoms, the ML superposition method produces very accurate structural alignments.

When macromolecules with different residue sequences are superimposed, other programs and algorithms discard residues that are aligned with gaps. Theseus, however, uses a novel superimposition algorithm that includes all of the data.

Tagit: Biology: Proteins, Field: Biology, field::biology:bioinformatics, field::biology:structural, Implemented in: C, User Interface: interface::commandline, role::program, Purpose: Analysing, use::comparing, works-with-format::plaintext

Muut pakettiin theseus liittyvät paketit

• dep: clustalo

  General-purpose multiple sequence alignment program for proteins

• dep: libc6 (>= 2.29)

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

• dep: libgsl25 (>= 2.6)

  GNU Scientific Library (GSL) -- library package

• dep: muscle

  Multiple alignment program of protein sequences

• sug: clustalw

  global multiple nucleotide or peptide sequence alignment

• sug: dialign

  Segment-based multiple sequence alignment

• sug: kalign

  Global and progressive multiple sequence alignment

• sug: mafft

  Multiple alignment program for amino acid or nucleotide sequences

• sug: probcons

  PROBabilistic CONSistency-based multiple sequence alignment

• sug: t-coffee

  Multiple Sequence Alignment

• sug: theseus-examples

  superimpose macromolecules using maximum likelihood (examples)

Imuroi theseus

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
amd64	375.4 kt	975.0 kt	[tiedostoluettelo]
arm64	343.0 kt	811.0 kt	[tiedostoluettelo]
armel	283.3 kt	821.0 kt	[tiedostoluettelo]
armhf	265.9 kt	566.0 kt	[tiedostoluettelo]
i386	283.1 kt	821.0 kt	[tiedostoluettelo]
mips64el	324.3 kt	834.0 kt	[tiedostoluettelo]
mipsel	337.4 kt	871.0 kt	[tiedostoluettelo]
ppc64el	405.6 kt	1,003.0 kt	[tiedostoluettelo]
s390x	284.3 kt	827.0 kt	[tiedostoluettelo]