Paketti: q2-dada2 (2020.11.1-3)
Links for q2-dada2
Debian-palvelut:
Imuroi lähdekoodipaketti q2-dada2:
Ylläpitäjät:
External Resources:
- Kotisivu [qiime2.org]
Samankaltaisia paketteja:
QIIME 2 plugin to work with adapters in sequence data
QIIME 2 is a powerful, extensible, and decentralized microbiome analysis package with a focus on data and analysis transparency. QIIME 2 enables researchers to start an analysis with raw DNA sequence data and finish with publication-quality figures and statistical results. Key features:
* Integrated and automatic tracking of data provenance * Semantic type system * Plugin system for extending microbiome analysis functionality * Support for multiple types of user interfaces (e.g. API, command line,graphical)
QIIME 2 is a complete redesign and rewrite of the QIIME 1 microbiome analysis pipeline. QIIME 2 will address many of the limitations of QIIME 1, while retaining the features that makes QIIME 1 a powerful and widely-used analysis pipeline.
QIIME 2 currently supports an initial end-to-end microbiome analysis pipeline. New functionality will regularly become available through QIIME 2 plugins. You can view a list of plugins that are currently available on the QIIME 2 plugin availability page. The future plugins page lists plugins that are being developed.
This package wraps the dada2 R package in BioConductor for modeling and correcting Illumina-sequenced amplicon errors. This was shown to improve the sensitivity of diversity analyses.
Muut pakettiin q2-dada2 liittyvät paketit
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-biom-format
- Biological Observation Matrix (BIOM) format (Python 3)
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- dep: python3-skbio
- Python3 data structures, algorithms, educational resources for bioinformatic
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- dep: q2-types
- QIIME 2 plugin defining types for microbiome analysis
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- dep: qiime
- Quantitative Insights Into Microbial Ecology
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- dep: r-base-core
- GNU R core of statistical computation and graphics system
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- dep: r-bioc-dada2
- sample inference from amplicon sequencing data
Imuroi q2-dada2
Arkkitehtuuri | Paketin koko | Koko asennettuna | Tiedostot |
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amd64 | 385.0 kt | 729.0 kt | [tiedostoluettelo] |