Paketti: idba (1.1.3-7)

[ Source: idba  ]

iterative De Bruijn Graph short read assemblers

IDBA stands for iterative de Bruijn graph assembler. In computational sequence biology, an assembler solves the puzzle coming from large sequencing machines that feature many gigabytes of short reads from a large genome.

This package provides several flavours of the IDBA assembler, as they all share the same source tree but serve different purposes and evolved over time.

IDBA is the basic iterative de Bruijn graph assembler for second-generation sequencing reads. IDBA-UD, an extension of IDBA, is designed to utilize paired-end reads to assemble low-depth regions and use progressive depth on contigs to reduce errors in high-depth regions. It is a generic purpose assembler and especially good for single-cell and metagenomic sequencing data. IDBA-Hybrid is another update version of IDBA-UD, which can make use of a similar reference genome to improve assembly result. IDBA-Tran is an iterative de Bruijn graph assembler for RNA-Seq data.

Muut pakettiin idba liittyvät paketit

• dep: libatomic1 (>= 4.8) [mipsel]

  support library providing __atomic built-in functions

• dep: libc6 (>= 2.29)

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

• dep: libgcc-s1 (>= 3.0) [ei armel, armhf, i386, mipsel]

  GCC:n apukirjasto

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [mipsel]

  dep: libgcc-s1 (>= 7) [i386]

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libstdc++6 (>= 5.2)

  GNU standardi C++ -kirjasto, versio 3

• dep: python3

  interactive high-level object-oriented language (default python3 version)

Imuroi idba

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
amd64	640.5 kt	4,190.0 kt	[tiedostoluettelo]
arm64	598.2 kt	3,766.0 kt	[tiedostoluettelo]
armel	591.0 kt	3,866.0 kt	[tiedostoluettelo]
armhf	606.4 kt	3,198.0 kt	[tiedostoluettelo]
i386	691.9 kt	4,490.0 kt	[tiedostoluettelo]
mips64el	651.4 kt	4,848.0 kt	[tiedostoluettelo]
mipsel	668.1 kt	4,901.0 kt	[tiedostoluettelo]
ppc64el	647.4 kt	4,630.0 kt	[tiedostoluettelo]
s390x	610.1 kt	4,358.0 kt	[tiedostoluettelo]