Paketti: bio-rainbow (2.0.4+dfsg-2)
Links for bio-rainbow
Debian-palvelut:
Imuroi lähdekoodipaketti bio-rainbow:
- [bio-rainbow_2.0.4+dfsg-2.dsc]
- [bio-rainbow_2.0.4+dfsg.orig.tar.xz]
- [bio-rainbow_2.0.4+dfsg-2.debian.tar.xz]
Ylläpitäjät:
- Debian Med Packaging Team (Laadunvalvontasivu, Mail Archive)
- Olivier Sallou (Laadunvalvontasivu)
- Pranav Ballaney (Laadunvalvontasivu)
External Resources:
- Kotisivu [sourceforge.net]
Samankaltaisia paketteja:
clustering and assembling short reads for bioinformatics
Efficient tool for clustering and assembling short reads, especially for RAD.
Rainbow is developed to provide an ultra-fast and memory-efficient solution to clustering and assembling short reads produced by RAD-seq. First, Rainbow clusters reads using a spaced seed method. Then, Rainbow implements a heterozygote calling like strategy to divide potential groups into haplotypes in a top-down manner. long a guided tree, it iteratively merges sibling leaves in a bottom-up manner if they are similar enough. Here, the similarity is defined by comparing the 2nd reads of a RAD segment. This approach tries to collapse heterozygote while discriminate repetitive sequences. At last, Rainbow uses a greedy algorithm to locally assemble merged reads into contigs. Rainbow not only outputs the optimal but also suboptimal assembly results. Based on simulation and a real guppy RAD-seq data, it is shown that Rainbow is more competent than the other tools in dealing with RAD-seq data.
Muut pakettiin bio-rainbow liittyvät paketit
|
|
|
|
-
- dep: libc6 (>= 2.29)
- GNU-C-kirjasto: jaetut kirjastot
myös näennäispaketti, jonka toteuttaa libc6-udeb
-
- dep: perl
- Larry Wallin kieli tekstitiedostojen analysointia ja raportointia varten
Imuroi bio-rainbow
Arkkitehtuuri | Paketin koko | Koko asennettuna | Tiedostot |
---|---|---|---|
amd64 | 58.8 kt | 186.0 kt | [tiedostoluettelo] |
arm64 | 58.1 kt | 178.0 kt | [tiedostoluettelo] |
armel | 56.7 kt | 179.0 kt | [tiedostoluettelo] |
armhf | 56.0 kt | 143.0 kt | [tiedostoluettelo] |
i386 | 63.9 kt | 203.0 kt | [tiedostoluettelo] |
mips64el | 61.4 kt | 209.0 kt | [tiedostoluettelo] |
mipsel | 59.9 kt | 202.0 kt | [tiedostoluettelo] |
ppc64el | 65.6 kt | 306.0 kt | [tiedostoluettelo] |
s390x | 55.9 kt | 194.0 kt | [tiedostoluettelo] |