Paketti: python3-shasta (0.7.0-3)

[ Source: shasta  ]

nanopore whole genome assembly (dynamic library)

De novo assembly from Oxford Nanopore reads. The goal of the Shasta long read assembler is to rapidly produce accurate assembled sequence using as input DNA reads generated by Oxford Nanopore flow cells.

Computational methods used by the Shasta assembler include:

 * Using a run-length representation of the read sequence. This makes
   the assembly process more resilient to errors in homopolymer
   repeat counts, which are the most common type of errors in Oxford
   Nanopore reads.

 * Using in some phases of the computation a representation of the read
   sequence based on markers, a fixed subset of short k-mers (k ≈ 10).

Shasta assembly quality is comparable or better than assembly quality achieved by other long read assemblers.

This package contains the dynamic library that can be interfaced and imported within Python.

Muut pakettiin python3-shasta liittyvät paketit

• dep: libboost-program-options1.74.0 (>= 1.74.0)

  program options library for C++

• dep: libc6 (>= 2.29)

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

• dep: libgcc-s1 (>= 3.4)

  GCC:n apukirjasto

• dep: libpng16-16 (>= 1.6.2-1)

  PNG library - runtime (version 1.6)

• dep: libpython3.9 (>= 3.9.0~b4)

  Shared Python runtime library (version 3.9)

• dep: libspoa7.0.0 (>= 4.0.5+ds)

  SIMD partial order alignment library

• dep: libstdc++6 (>= 9)

  GNU standardi C++ -kirjasto, versio 3

• dep: ncbi-blast+

  next generation suite of BLAST sequence search tools

• dep: python3 (<< 3.10)

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (>= 3.9~)

Imuroi python3-shasta

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
amd64	1,463.9 kt	6,751.0 kt	[tiedostoluettelo]