Paketti: r-bioc-scater (1.26.1+ds-1)

[ Source: r-bioc-scater  ]

Single-Cell Analysis Toolkit for Gene Expression Data in R

A collection of tools for doing various analyses of single-cell RNA-seq gene expression data, with a focus on quality control and visualization.

Muut pakettiin r-bioc-scater liittyvät paketit

• dep: r-api-4.0

  näennäispaketti, jonka toteuttaa r-base-core

• dep: r-api-bioc-3.16

  näennäispaketti, jonka toteuttaa r-bioc-biocgenerics

• dep: r-base-core (>= 4.2.2.20221110-1)

  GNU R core of statistical computation and graphics system

• dep: r-bioc-beachmat

  I/O for several formats storing matrix data

• dep: r-bioc-biocgenerics

  generic functions for Bioconductor

• dep: r-bioc-biocneighbors

  Nearest Neighbor Detection for Bioconductor Packages

• dep: r-bioc-biocparallel

  BioConductor facilities for parallel evaluation

• dep: r-bioc-biocsingular

  Singular Value Decomposition for Bioconductor Packages

• dep: r-bioc-delayedarray

  BioConductor delayed operations on array-like objects

• dep: r-bioc-delayedmatrixstats

  Functions on Rows and Columns of 'DelayedMatrix' Objects

• dep: r-bioc-s4vectors

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-scuttle

  BioConductor single-cell RNA-Seq analysis utilities

• dep: r-bioc-singlecellexperiment

  S4 Classes for Single Cell Data

• dep: r-bioc-summarizedexperiment

  BioConductor assay container

• dep: r-cran-ggbeeswarm

  GNU R categorical scatter (violin point) plots

• dep: r-cran-ggplot2

  implementation of the Grammar of Graphics

• dep: r-cran-ggrastr

  Bioconductor rasterize layers for 'ggplot2'

• dep: r-cran-ggrepel

  auto-position non-overlapping text labels in plots

• dep: r-cran-gridextra

  GNU R package with extensions for the grid package

• dep: r-cran-matrix

  GNU R package of classes for dense and sparse matrices

• dep: r-cran-pheatmap

  GNU R package to create pretty heatmaps

• dep: r-cran-rcolorbrewer

  GNU R package providing suitable color palettes

• dep: r-cran-rcppml

  GNU R Rcpp Machine Learning Library

• dep: r-cran-rlang

  Functions for Base Types and Core R and 'Tidyverse' Features

• dep: r-cran-rtsne

  GNU R T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut

• dep: r-cran-uwot

  GNU R uniform manifold approximation and projection (UMAP)

• dep: r-cran-viridis

  GNU R package for color maps from matplotlib

• sug: r-bioc-biobase

  base functions for Bioconductor

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-biomart

  GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)

• sug: r-bioc-scrnaseq

  Collection of Public Single-Cell RNA-Seq Datasets

• sug: r-cran-cowplot

  GNU R streamlined plot theme and plot annotations for 'ggplot2'

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

• sug: r-cran-robustbase

  GNU R package providing basic robust statistics

• sug: r-cran-testthat

  GNU R testsuite

Imuroi r-bioc-scater

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