Package: e-mem (1.0.1-5)

[ Source: e-mem  ]

Efficient computation of Maximal Exact Matches for very large genomes

E-MEM enables efficient computation of Maximal Exact Matches (MEMs) that does not use full text indexes. The algorithm uses much less space and is highly amenable to parallelization. It can compute all MEMs of minimum length 100 between the whole human and mouse genomes on a 12 core machine in 10 min and 2 GB of memory; the required memory can be as low as 600 MB. It can run efficiently genomes of any size. Extensive testing and comparison with currently best algorithms is provided.

Mummer has many different scripts where one of the key program is MEM computation. In all the scripts, the MEM computation program can be replaced with e-mem with ease for better performance.

Other Packages Related to e-mem

• dep: libc6 (>= 2.4)

  Biblioteca de C de GNU: Bibliotecas compartidas
  also a virtual package provided by libc6-udeb

• dep: libgcc-s1 (>= 3.5)

  Biblioteca de ayuda de GCC

• dep: libgomp1 (>= 4.9)

  biblioteca para uso de OpenMP en GCC (GOMP)

• dep: libstdc++6 (>= 5.2)

  biblioteca estándar de C++ de GNU v3

• enh: mummer

  Alineación eficiente de secuencias de genomas completos

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Architecture	Package Size	Installed Size	Files
armhf	33.6 kB	81.0 kB	[list of files]