Package: megadepth (1.2.0-4 and others) [debports]

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computes coverage from BigWig and BAM sequencing files

A major concern for the interpretation of DNA and RNA (!) sequencing is the number of reads that cover a particular area. This package has interesting statistics for the distinction of coding and non-coding parts of the genome and knows how to interpret transcripts that span multiple exons.

This package is a successor of the program 'bamcount'.

Other Packages Related to megadepth

• dep: libbigwig0t64 (>= 0.4.6)

  C library for handling bigWig files

• dep: libc6 (>= 2.34)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libcurl3t64-gnutls (>= 7.16.2)

  easy-to-use client-side URL transfer library (GnuTLS flavour)

• dep: libdeflate0 (>= 1.0)

  fast, whole-buffer DEFLATE-based compression and decompression

• dep: libgcc-s1 (>= 3.4)

  GCC support library

• dep: libhts3t64 (>= 1.17)

  C library for high-throughput sequencing data formats

• dep: libstdc++6 (>= 13.1)

  GNU Standard C++ Library v3

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

• sug: r-bioc-megadepth

  BioCOnductor BigWig and BAM related utilities

Download megadepth

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
sparc64 (unofficial port)	1.2.0-4+b1	70.2 kB	1,047.0 kB	[list of files]