Package: r-bioc-rtracklayer (1.64.0-1)

[ Source: r-bioc-rtracklayer  ]

GNU R interface to genome browsers and their annotation tracks

Extensible framework for interacting with multiple genome browsers (currently UCSC built-in) and manipulating annotation tracks in various formats (currently GFF, BED, bedGraph, BED15, WIG, BigWig and 2bit built-in). The user may export/import tracks to/from the supported browsers, as well as query and modify the browser state, such as the current viewport.

Other Packages Related to r-bioc-rtracklayer

• dep: libc6 (>= 2.38)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libcurl4t64 (>= 7.16.2)

  easy-to-use client-side URL transfer library (OpenSSL flavour)

• dep: libssl3t64 (>= 3.0.0)

  Secure Sockets Layer toolkit - shared libraries

• dep: r-api-4.0

  virtual package provided by r-base-core

• dep: r-api-bioc-3.19

  virtual package provided by r-bioc-biocgenerics

• dep: r-bioc-biocgenerics (>= 0.50.0)

  generic functions for Bioconductor

• dep: r-bioc-biocio (>= 1.14.0)

  standard input and output for Bioconductor packages

• dep: r-bioc-biostrings (>= 2.72.1)

  GNU R string objects representing biological sequences

• dep: r-bioc-genomeinfodb (>= 1.40.1)

  BioConductor utilities for manipulating chromosome identifiers

• dep: r-bioc-genomicalignments (>= 1.40.0)

  BioConductor representation and manipulation of short genomic alignments

• dep: r-bioc-genomicranges (>= 1.56.1)

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-iranges (>= 2.38.1)

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-rsamtools (>= 2.20.0)

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

• dep: r-bioc-s4vectors (>= 0.42.1)

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-xvector (>= 0.44.0)

  BioConductor representation and manpulation of external sequences

• dep: r-bioc-zlibbioc (>= 1.50.0)

  (Virtual) zlibbioc Bioconductor package

• dep: r-cran-curl

  GNU R modern and flexible web client for R

• dep: r-cran-httr

  GNU R tools for working with URLs and HTTP

• dep: r-cran-restfulr (>= 0.0.13)

  GNU R interface to RESTful web wervices

• dep: r-cran-xml (>= 1.98-0)

  GNU R package for XML parsing and generation

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

• sug: r-bioc-bsgenome (>= 1.72.0)

  BioConductor infrastructure for Biostrings-based genome data packages

• sug: r-bioc-genefilter (>= 1.86.0)

  methods for filtering genes from microarray experiments

• sug: r-bioc-genomicfeatures (>= 1.56.0)

  GNU R tools for making and manipulating transcript centric annotations

• sug: r-bioc-limma (>= 3.60.3)

  linear models for microarray data

• sug: r-bioc-org.hs.eg.db (>= 3.19.1)

  genome-wide annotation for Human

• sug: r-cran-runit

  GNU R package providing unit testing framework

Download r-bioc-rtracklayer

Download for all available architectures

Architecture	Package Size	Installed Size	Files
s390x	4,941.1 kB	6,589.0 kB	[list of files]