Package: gatb-core (1.4.2+dfsg-13 and others) [debports]

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Genome Analysis Toolbox with de-Bruijn graph

The GATB-CORE project provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data sets of any size on multi-core desktop computers, including very huge amount of reads data coming from any kind of organisms such as bacteria, plants, animals and even complex samples (e.g. metagenomes). Read more about GATB at https://gatb.inria.fr/. By itself GATB-CORE is not an NGS data analysis tool. However, it can be used to create such tools. There already exist a set of ready-to-use tools relying on GATB-CORE library: see https://gatb.inria.fr/software/

Other Packages Related to gatb-core

• dep: libc6.1 (>= 2.37)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

• dep: libcppunit-1.15-0 (>= 1.15.1)

  Unit Testing Library for C++

• dep: libgcc-s1 (>= 4.2)

  GCC support library

• dep: libhdf5-103-1t64

  HDF5 C runtime files - serial version

• dep: libstdc++6 (>= 13.1)

  GNU Standard C++ Library v3

• dep: libunwind8

  library to determine the call-chain of a program - runtime

• dep: zlib1g (>= 1:1.2.6)

  compression library - runtime

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Architecture	Version	Package Size	Installed Size	Files
ia64 (unofficial port)	1.4.2+dfsg-13+b1	3,643.7 kB	32,770.0 kB	[list of files]