Package: embassy-domsearch (1:0.1.660-4 and others)

[ Source: embassy-domsearch  ]

Extra EMBOSS commands to search for protein domains

The DOMSEARCH programs were developed by Jon Ison and colleagues at MRC HGMP for their protein domain research. They are included as an EMBASSY package as a work in progress.

Applications in this DOMSEARCH release are seqfraggle (removes fragment sequences from DHF files), seqnr (removes redundancy from DHF files), seqsearch (generates PSI-BLAST hits (DHF file) from a DAF file), seqsort (Remove ambiguous classified sequences from DHF files) and seqwords (Generates DHF files from keyword search of UniProt).

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: Analysing

Other Packages Related to embassy-domsearch

• dep: emboss-lib (<< 6.6.1~)

  EMBOSS Libraries

  dep: emboss-lib (>= 6.6.0+dfsg) [not m68k, sh4, x32]

  dep: emboss-lib (>= 6.6.0-1~) [m68k, sh4, x32]

• dep: libc6 (>= 2.16) [x32]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.28) [sh4]

  dep: libc6 (>= 2.34) [not alpha, ia64, m68k, sh4, x32]

  dep: libc6 (>= 2.4) [m68k]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libx11-6

  X11 client-side library

• rec: emboss

  European molecular biology open software suite

• sug: embassy

  Package not available

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Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1:0.1.660-4	58.8 kB	833.0 kB	[list of files]
amd64	1:0.1.660-4	59.7 kB	609.0 kB	[list of files]
arm64	1:0.1.660-4+b1	58.7 kB	834.0 kB	[list of files]
hppa (unofficial port)	1:0.1.660-3	59.4 kB	570.0 kB	[list of files]
ia64 (unofficial port)	1:0.1.660-4	63.2 kB	608.0 kB	[list of files]
m68k (unofficial port)	1:0.1.660-3	60.5 kB	581.0 kB	[list of files]
mips64el	1:0.1.660-4	58.9 kB	836.0 kB	[list of files]
ppc64 (unofficial port)	1:0.1.660-4	60.2 kB	833.0 kB	[list of files]
ppc64el	1:0.1.660-4	60.2 kB	833.0 kB	[list of files]
riscv64	1:0.1.660-4	58.1 kB	573.0 kB	[list of files]
sh4 (unofficial port)	1:0.1.660-3	61.8 kB	569.0 kB	[list of files]
sparc64 (unofficial port)	1:0.1.660-4	59.0 kB	5,640.0 kB	[list of files]
x32 (unofficial port)	1:0.1.660-3	60.3 kB	585.0 kB	[list of files]