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Package: perm (0.4.0-8) [debports]

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efficient mapping of short reads with periodic spaced seeds

PerM is a software package which was designed to perform highly efficient genome scale alignments for hundreds of millions of short reads produced by the ABI SOLiD and Illumina sequencing platforms. Today PerM is capable of providing full sensitivity for alignments within 4 mismatches for 50bp SOLID reads and 9 mismatches for 100bp Illumina reads.

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Download perm

Download for all available architectures
Architecture Package Size Installed Size Files
alpha (unofficial port) 128.2 kB413.0 kB [list of files]