[ Source: libssw ]
Package: ssw-align (1.2.5-1 and others)
Links for ssw-align
Debian Resources:
Download Source Package libssw:
Maintainers:
- Debian Med Packaging Team (QA Page, Mail Archive)
- Sascha Steinbiss (QA Page)
- Michael R. Crusoe (QA Page)
External Resources:
- Homepage [github.com]
Similar packages:
Experimental package
Warning: This package is from the experimental distribution. That means it is likely unstable or buggy, and it may even cause data loss. Please be sure to consult the changelog and other possible documentation before using it.
Smith-Waterman aligner based on libssw
This package provides a command-line aligner based on the libssw library, a fast SIMD accelerated implementation of the Smith-Waterman algorithm. The input files can be in FASTA or FASTQ format. Both target and query files can contain multiple sequences. Each sequence in the query file will be aligned with all sequences in the target file. Output is provided in SAM or BLAST-like text format.
Other Packages Related to ssw-align
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- dep: libc6 (>= 2.34) [not alpha, ia64, sh4]
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
- dep: libc6 (>= 2.37) [sh4]
-
- dep: libc6.1 (>= 2.34) [alpha]
- GNU C Library: Shared libraries
also a virtual package provided by libc6.1-udeb
- dep: libc6.1 (>= 2.37) [ia64]
-
- dep: libssw1 (= 1.2.5-1) [not riscv64]
- fast SIMD parallelized implementation of the Smith-Waterman algorithm
- dep: libssw1 (= 1.2.5-1+b1) [riscv64]
-
- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
Download ssw-align
| Architecture | Version | Package Size | Installed Size | Files |
|---|---|---|---|---|
| alpha (unofficial port) | 1.2.5-1 | 22.0 kB | 84.0 kB | [list of files] |
| amd64 | 1.2.5-1 | 19.1 kB | 52.0 kB | [list of files] |
| arm64 | 1.2.5-1 | 17.5 kB | 83.0 kB | [list of files] |
| armel | 1.2.5-1 | 20.8 kB | 55.0 kB | [list of files] |
| armhf | 1.2.5-1 | 19.5 kB | 47.0 kB | [list of files] |
| i386 | 1.2.5-1 | 23.5 kB | 71.0 kB | [list of files] |
| ia64 (unofficial port) | 1.2.5-1 | 26.8 kB | 77.0 kB | [list of files] |
| m68k (unofficial port) | 1.2.5-1 | 19.9 kB | 59.0 kB | [list of files] |
| mips64el | 1.2.5-1 | 21.5 kB | 85.0 kB | [list of files] |
| ppc64 (unofficial port) | 1.2.5-1 | 23.3 kB | 84.0 kB | [list of files] |
| ppc64el | 1.2.5-1 | 20.5 kB | 84.0 kB | [list of files] |
| riscv64 | 1.2.5-1+b1 | 22.9 kB | 53.0 kB | [list of files] |
| s390x | 1.2.5-1 | 23.1 kB | 60.0 kB | [list of files] |
| sh4 (unofficial port) | 1.2.5-1 | 24.9 kB | 83.0 kB | [list of files] |
| sparc64 (unofficial port) | 1.2.5-1 | 22.1 kB | 1,044.0 kB | [list of files] |
| x32 (unofficial port) | 1.2.5-1 | 18.8 kB | 51.0 kB | [list of files] |