Package: r-bioc-genomeinfodb (1.42.1+dfsg-1)

[ Source: r-bioc-genomeinfodb  ]

Experimental package

Warning: This package is from the experimental distribution. That means it is likely unstable or buggy, and it may even cause data loss. Please be sure to consult the changelog and other possible documentation before using it.

BioConductor utilities for manipulating chromosome identifiers

This package contains BioConductor utilities for manipulating chromosome and other 'seqname' identifiers.

The Seqnames package contains data and functions that define and allow translation between different chromosome sequence naming conventions (e.g., "chr1" versus "1"), including a function that attempts to place sequence names in their natural, rather than lexicographic, order.

Other Packages Related to r-bioc-genomeinfodb

• dep: r-api-4.0

  Package not available

• dep: r-api-bioc-3.20

  virtual package provided by r-bioc-biocgenerics

• dep: r-bioc-biocgenerics (>= 0.37.0)

  generic functions for Bioconductor

• dep: r-bioc-genomeinfodbdata

  BioConductor species and taxonomy ID look up tables

• dep: r-bioc-iranges (>= 2.13.12)

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-s4vectors (>= 0.25.12)

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-ucsc.utils

  Low-level utilities to retrieve data from the UCSC Genome Browser

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-bsgenome

  BioConductor infrastructure for Biostrings-based genome data packages

• sug: r-bioc-genomicalignments

  BioConductor representation and manipulation of short genomic alignments

• sug: r-bioc-genomicfeatures

  GNU R tools for making and manipulating transcript centric annotations

• sug: r-bioc-genomicranges

  BioConductor representation and manipulation of genomic intervals

• sug: r-bioc-rsamtools

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

• sug: r-cran-data.table

  GNU R extension of Data.frame

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-r.utils

  GNU R various programming utilities

• sug: r-cran-runit

  GNU R package providing unit testing framework

Download r-bioc-genomeinfodb

Download for all available architectures

Architecture	Package Size	Installed Size	Files
all	3,753.8 kB	5,034.0 kB	[list of files]