Package: miniasm (0.3+dfsg-1)
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- Homepage [github.com]
Similar packages:
ultrafast de novo assembler for long noisy DNA sequencing reads
Miniasm is an experimental very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream assemblers, miniasm does not have a consensus step. It simply concatenates pieces of read sequences to generate the final unitig sequences. Thus the per-base error rate is similar to the raw input reads.
Other Packages Related to miniasm
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- dep: libc6 (>= 2.4)
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also a virtual package provided by libc6-udeb
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- dep: zlib1g (>= 1:1.1.4)
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- rec: minimap
- tool for approximate mapping of long biosequences such as DNA reads
Download miniasm
Architecture | Package Size | Installed Size | Files |
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i386 | 32.0 kB | 74.0 kB | [list of files] |