Package: python-pbalign (0.3.2-1)

[ Source: pbalign  ]

map Pacific Biosciences reads to reference DNA sequences (Python2)

pbalign aligns PacBio reads to reference sequences, filters aligned reads according to user-specific filtering criteria, and converts the output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5) format.

pbalign is part of the SMRTAnalysis suite. This package provides the Python library backend.

Other Packages Related to python-pbalign

• dep: blasr (>= 5.3+0)

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• dep: python

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• dep: python-pbcommand

  common command-line interface for Pacific Biosciences analysis modules

• dep: python-pbcore

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• dep: python-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 2)

• rec: hdf5-tools

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• rec: python-pbh5tools

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• sug: bowtie2

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• sug: gmap

  spliced and SNP-tolerant alignment for mRNA and short reads

• sug: pbalign-doc

  documentation for pbalign

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