Package: python-biotools (1.2.12-3)

[ Source: python-biotools  ]

Python bioinformatics utilities for high-throughput genomic sequencing

This package contains utilities like

 biotools.align - align sequences (hybrid between Needleman-Wunsch and
                  Smith-Waterman which is used to find the subsequence
                  within a larger sequence that best aligns to a reference)
 biotools.annotation - create annotation files. The annotations can be used
                       to create a hierarchy among the annotations
 biotools.BLAST - manage BLAST databases and interface with the BLAST+
                  standalone program available from NCBI.
 biotools.clustal - interface to clustalw global (multiple nucleotide or
                    peptide sequence alignment)
 biotools.complement - creates the complement of a sequence, which can then be
                       reversed
 biotools.sequence - various tools to deal with sequences
 biotools.translate - translate a nucleotide using the standard genetic code

This package contains the Python 2 module.

Other Packages Related to python-biotools

• dep: clustalw

  global multiple nucleotide or peptide sequence alignment

• dep: ncbi-blast+

  next generation suite of BLAST sequence search tools

  or ncbi-blast+-legacy

  NCBI Blast legacy call script

• dep: python

  interactive high-level object-oriented language (Python2 version)

• dep: python-matplotlib

  Python based plotting system in a style similar to Matlab

• dep: python-numpy

  Numerical Python adds a fast array facility to the Python language

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