Package: libjellyfish-perl (2.3.0-10)

[ Source: jellyfish  ]

count k-mers in DNA sequences (Perl bindings of jellyfish)

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

This package contains the Perl bindings of jellyfish.

Tags: Software Development: Perl Development, Libraries, Implemented in: implemented-in::c, implemented-in::perl, Role: Development Library

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• dep: libc6 (>= 2.14) [amd64]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.4) [not amd64, arm64, ppc64el]

• dep: libgcc-s1 (>= 3.0) [not armel, armhf]

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  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: perl

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• dep: perlapi-5.32.1

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Architecture	Package Size	Installed Size	Files
amd64	54.6 kB	174.0 kB	[list of files]
arm64	50.7 kB	170.0 kB	[list of files]
armel	55.9 kB	172.0 kB	[list of files]
armhf	56.6 kB	140.0 kB	[list of files]
i386	63.1 kB	184.0 kB	[list of files]
mips64el	49.3 kB	191.0 kB	[list of files]
ppc64el	54.8 kB	230.0 kB	[list of files]