Package: gsort (0.1.4-3 and others)

[ Source: gsort  ]

sort genomic data

gsort is a tool to sort genomic files according to a genomefile. For example, to sort VCF to have order: X, Y, 2, 1, 3, ... and the header needs to be kept at the top.

As a more likely example, if a file nneds to be sorted to match GATK order (1 ... X, Y, MT) which is not possible with any other sorting tool. With gsort one can simply place MT as the last chrom in the ".genome" file.

It will also be useful for getting files ready for use in bedtools.

Other Packages Related to gsort

• dep: libc6 (>= 2.3.6-6~)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

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Architecture	Version	Package Size	Installed Size	Files
i386	0.1.4-3+b6	1,620.6 kB	4,579.0 kB	[list of files]