Paket: gsort (0.1.4-3 und andere)

[ Quellcode: gsort  ]

sort genomic data

gsort is a tool to sort genomic files according to a genomefile. For example, to sort VCF to have order: X, Y, 2, 1, 3, ... and the header needs to be kept at the top.

As a more likely example, if a file nneds to be sorted to match GATK order (1 ... X, Y, MT) which is not possible with any other sorting tool. With gsort one can simply place MT as the last chrom in the ".genome" file.

It will also be useful for getting files ready for use in bedtools.

Andere Pakete mit Bezug zu gsort

• dep: libc6 (>= 2.3.6-6~)

  GNU-C-Bibliothek: Laufzeitbibliotheken
  auch ein virtuelles Paket, bereitgestellt durch libc6-udeb

gsort herunterladen

Download für alle verfügbaren Architekturen

Architektur	Version	Paketgröße	Größe (installiert)	Dateien
i386	0.1.4-3+b6	1.620,6 kB	4.579,0 kB	[Liste der Dateien]