Package: covtobed (1.2.0+dfsg-1)

[ Source: covtobed  ]

convert the coverage track from a BAM file into a BED file

Reads one (or more) alignment files (sorted BAM) and prints a BED with the coverage. It will join consecutive bases with the same coverage, and can be used to only print a BED file with the regions having a specific coverage range.

Other Packages Related to covtobed

• dep: bamtools

  toolkit for manipulating BAM (genome alignment) files

• dep: libbamtools2.5.1 (>= 2.5.1+dfsg)

  dynamic library for manipulating BAM (genome alignment) files

• dep: libc6 (>= 2.14) [amd64]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.4) [not amd64, arm64, ppc64el]

• dep: libgcc-s1 (>= 3.0) [not armel, armhf]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

• dep: zlib1g

  compression library - runtime

Download covtobed

Download for all available architectures

Architecture	Package Size	Installed Size	Files
amd64	44.8 kB	137.0 kB	[list of files]
arm64	39.7 kB	121.0 kB	[list of files]
armel	40.3 kB	120.0 kB	[list of files]
armhf	41.8 kB	92.0 kB	[list of files]
i386	48.5 kB	144.0 kB	[list of files]
mips64el	43.4 kB	155.0 kB	[list of files]
mipsel	43.8 kB	149.0 kB	[list of files]
ppc64el	45.5 kB	209.0 kB	[list of files]
s390x	40.7 kB	133.0 kB	[list of files]