Package: r-bioc-biovizbase (1.38.0-1)

[ Source: r-bioc-biovizbase  ]

GNU R basic graphic utilities for visualization of genomic data

The biovizBase package is designed to provide a set of utilities, color schemes and conventions for genomic data. It serves as the base for various high-level packages for biological data visualization. This saves development effort and encourages consistency.

Other Packages Related to r-bioc-biovizbase

• dep: libc6 (>= 2.17)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: r-api-4.0

  virtual package provided by r-base-core

• dep: r-api-bioc-3.12

  virtual package provided by r-bioc-biocgenerics

• dep: r-base-core (>= 4.0.3-1)

  GNU R core of statistical computation and graphics system

• dep: r-bioc-annotationdbi

  GNU R Annotation Database Interface for BioConductor

• dep: r-bioc-annotationfilter (>= 0.99.8)

  facilities for filtering Bioconductor annotation resources

• dep: r-bioc-biocgenerics

  generic functions for Bioconductor

• dep: r-bioc-biostrings (>= 2.33.11)

  GNU R string objects representing biological sequences

• dep: r-bioc-ensembldb (>= 1.99.13)

  GNU R utilities to create and use an Ensembl based annotation database

• dep: r-bioc-genomeinfodb (>= 1.5.14)

  BioConductor utilities for manipulating chromosome identifiers

• dep: r-bioc-genomicalignments (>= 1.1.16)

  BioConductor representation and manipulation of short genomic alignments

• dep: r-bioc-genomicfeatures (>= 1.21.19)

  GNU R tools for making and manipulating transcript centric annotations

• dep: r-bioc-genomicranges (>= 1.23.21)

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-iranges (>= 1.99.28)

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-rsamtools (>= 1.17.28)

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

• dep: r-bioc-s4vectors (>= 0.23.19)

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-summarizedexperiment

  BioConductor assay container

• dep: r-bioc-variantannotation (>= 1.11.4)

  BioConductor annotation of genetic variants

• dep: r-cran-dichromat

  GNU R color schemes for dichromats

• dep: r-cran-hmisc

  GNU R miscellaneous functions by Frank Harrell

• dep: r-cran-rcolorbrewer

  GNU R package providing suitable color palettes

• dep: r-cran-rlang

  Functions for Base Types and Core R and 'Tidyverse' Features

• dep: r-cran-scales

  Scale functions for visualization

• rec: r-cran-foreign

  GNU R package to read/write data from other stat. systems

• rec: r-cran-nnet

  GNU R package for feed-forward neural networks

• rec: r-cran-runit

  GNU R package providing unit testing framework

• sug: r-bioc-bsgenome

  BioConductor infrastructure for Biostrings-based genome data packages

• sug: r-bioc-rtracklayer

  GNU R interface to genome browsers and their annotation tracks

Download r-bioc-biovizbase

Download for all available architectures

Architecture	Package Size	Installed Size	Files
arm64	2,691.7 kB	3,129.0 kB	[list of files]