Package: ltrsift (1.0.2-9 and others)

[ Source: ltrsift  ]

postprocessing and classification of LTR retrotransposons

LTRsift is a graphical desktop tool for semi-automatic postprocessing of de novo predicted LTR retrotransposon annotations, such as the ones generated by LTRharvest and LTRdigest. Its user-friendly interface displays LTR retrotransposon candidates, their putative families and their internal structure in a hierarchical fashion, allowing the user to "sift" through the sometimes large results of de novo prediction software. It also offers customizable filtering and classification functionality.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, User Interface: Graphical User Interface, interface::x11, role::program, Scope: Utility, Interface Toolkit: GTK, Purpose: use::analysing, use::browsing, Comparing, Data Organisation, use::viewing, x11::application

Other Packages Related to ltrsift

• dep: libc6 (>= 2.17) [arm64, ppc64el]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.7) [not arm64, ppc64el]

• dep: libcairo2 (>= 1.2.4)

  Cairo 2D vector graphics library

• dep: libgdk-pixbuf-2.0-0 (>= 2.22.0)

  GDK Pixbuf library

• dep: libgenometools0 (>= 1.6.1+ds) [not mips64el, mipsel]

  versatile genome analysis library

  dep: libgenometools0 (>= 1.6.2+ds) [mips64el, mipsel]

• dep: libglib2.0-0 (>= 2.35.9)

  GLib library of C routines

• dep: libgtk2.0-0 (>= 2.18.0)

  GTK graphical user interface library - old version

• dep: libpango-1.0-0 (>= 1.14.0)

  Layout and rendering of internationalized text

• rec: last-align

  genome-scale comparison of biological sequences

• rec: ncbi-blast+

  next generation suite of BLAST sequence search tools

Download ltrsift

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
amd64	1.0.2-9+b1	107.4 kB	378.0 kB	[list of files]
arm64	1.0.2-9+b1	95.8 kB	366.0 kB	[list of files]
armel	1.0.2-9+b1	94.5 kB	328.0 kB	[list of files]
armhf	1.0.2-9+b1	95.3 kB	280.0 kB	[list of files]
i386	1.0.2-9+b1	118.2 kB	440.0 kB	[list of files]
mips64el	1.0.2-9+b1	87.6 kB	406.0 kB	[list of files]
mipsel	1.0.2-9+b1	91.2 kB	417.0 kB	[list of files]
ppc64el	1.0.2-9+b1	106.6 kB	514.0 kB	[list of files]
s390x	1.0.2-9+b1	96.9 kB	382.0 kB	[list of files]