Package: qcumber (2.3.0-2)

[ Source: qcumber  ]

quality control of genomic sequences

QCPipeline is a tool for quality control. The workflow is as follows:

 1. Quality control with FastQC
 2. Trim Reads with Trimmomatic
 3. Quality control of trimmed reads with FastQC
 4. Map reads against reference using bowtie2
 5. Classify reads with Kraken

Other Packages Related to qcumber

• dep: debconf (>= 0.5)

  Debian configuration management system

  or debconf-2.0

  virtual package provided by cdebconf, cdebconf-udeb, debconf

• dep: libjs-angularjs

  lets you write client-side web applications as if you had a smarter browser

• dep: libjs-bootstrap

  HTML, CSS and JS framework

• dep: libjs-d3

  JavaScript visualization library for HTML and SVG

• dep: libjs-jquery

  JavaScript library for dynamic web applications

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: python3-biopython

  Python3 library for bioinformatics

• dep: python3-jinja2

  small but fast and easy to use stand-alone template engine

• dep: python3-matplotlib

  Python based plotting system in a style similar to Matlab (Python 3)

• dep: r-base-core

  GNU R core of statistical computation and graphics system

• dep: r-bioc-savr

  GNU R parse and analyze Illumina SAV files

• dep: r-cran-ggplot2

  implementation of the Grammar of Graphics

• dep: r-cran-quantreg

  GNU R package for quantile regression

• dep: snakemake

  pythonic workflow management system

Download qcumber

Download for all available architectures

Architecture	Package Size	Installed Size	Files
all	49.3 kB	236.0 kB	[list of files]