Package: examl (3.0.22-3 and others)

[ Source: examl  ]

Exascale Maximum Likelihood (ExaML) code for phylogenetic inference

Exascale Maximum Likelihood (ExaML) is a code for phylogenetic inference using MPI. This code implements the popular RAxML search algorithm for maximum likelihood based inference of phylogenetic trees.

ExaML is a strapped-down light-weight version of RAxML for phylogenetic inference on huge datasets. It can only execute some very basic functions and is intended for computer-savvy users that can write little perl-scripts and have experience using queue submission scripts for clusters. ExaML only implements the CAT and GAMMA models of rate heterogeneity for binary, DNA, and protein data.

ExaML uses a radically new MPI parallelization approach that yields improved parallel efficiency, in particular on partitioned multi-gene or whole-genome datasets. It also implements a new load balancing algorithm that yields better parallel efficiency.

It is up to 4 times faster than its predecessor RAxML-Light and scales to a larger number of processors.

Other Packages Related to examl

• dep: libc6 (>= 2.34)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libopenmpi3 (>= 4.1.4)

  high performance message passing library -- shared library

• dep: openmpi-bin

  high performance message passing library -- binaries

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amd64	3.0.22-3+b2	928.7 kB	5,930.0 kB	[list of files]
arm64	3.0.22-3+b2	780.3 kB	1,664.0 kB	[list of files]
armel	3.0.22-3+b2	798.2 kB	1,881.0 kB	[list of files]
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i386	3.0.22-3+b2	1,087.1 kB	7,008.0 kB	[list of files]
mips64el	3.0.22-3+b2	815.5 kB	1,812.0 kB	[list of files]
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s390x	3.0.22-3+b2	816.6 kB	1,996.0 kB	[list of files]